PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904888
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 595aa    MW: 66438.9 Da    PI: 8.6795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904888genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3413.4e-134635312192
                HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
         B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                +fa+ h + +++++t++l+    + We k+ y  ++++ +l +GW +Fv++ gL++gD+++F+l+++ ++ ++
  462904888 463 RFASVH-L-PAKGQTVVLQC-GRKIWETKMMYHTGRRW-TLNGGWPNFVRDSGLRVGDICLFELKKNeKKLTM 531
                555444.2.34555666555.789******87777655.7999*********************987555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-15298403IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-15298402IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.009304404IPR003340B3 DNA binding domain
CDDcd100171.25E-16304402No hitNo description
PROSITE profilePS508639.488320404IPR003340B3 DNA binding domain
PfamPF023621.5E-7320401IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644439537IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-16442526IPR015300DNA-binding pseudobarrel domain
CDDcd100178.81E-14442533No hitNo description
SMARTSM010190.0054451537IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-14462526IPR015300DNA-binding pseudobarrel domain
PfamPF023629.3E-11462532IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGTERVRIIG HRTGLDLERN ASLISTLVLL MRPHSSGVRD CKSSATHQYC LDKVVFDASL  60
ADWSCHECLQ SHVHQPITKR VESGRASRPC HDRQTNEHAS VICKNVEVNC AKDNKTMVGV  120
HKNKDVLMLE REEEEEVEVQ QVCNASNELQ QRTMAVNAPE SFTLQNNTID KVVPYSPNDG  180
CEKLFSCDGI KNIASFRETN TDSLDISSTS QHDKSESLKS SEISVDQNGS SYHHEKIVKM  240
AGTFLSSQES GEDSTSENES MESGNLQASP GADYVVSRTS YLTEAQTEKV KAFIKKTKPE  300
ITAFVAVMRK GNIQPPGPCL GISKEYALAH FPHTSKNVTL QMPGKSKKWH PIFYKRDESR  360
KNMLMGQWLD FVRDNHVHEG DICFLAPEKG GGRSMFTVYL LRSTLAHSRC GAGFLRGGPC  420
LGGSIANIAS EVRMMEKQND AIMKNNNVGV AQRWMLAEEL GSRFASVHLP AKGQTVVLQC  480
GRKIWETKMM YHTGRRWTLN GGWPNFVRDS GLRVGDICLF ELKKNEKKLT MRVPFGAFVY  540
SACFVYSANG PWLLPISGLR QKPVSLAKSR ALSILRFLCA VYMTWLSAAN VFLQK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982416.11e-156B3 domain-containing protein Os03g0619800
TrEMBLA0A3L6SFS41e-168A0A3L6SFS4_PANMI; Uncharacterized protein
STRINGPavir.Ia01276.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172