PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462905134

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 693aa MW: 78645.5 Da PI: 6.2977

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462905134	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.4	2.1e-102	253	609	1	360
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l+ lL++cA+a++ +++ a++lL+++++++sp+gd qRla y++ +L+arla++++++y++l ++ts + l+a++lf ++P+ +++ Nq 462905134 253 LRALLIQCAQALAFNNHPFASKLLKKIRHHSSPYGDGSQRLAVYLADGLEARLAGTGNQIYEKLIRKRTS---ARDMLKAYRLFIAACPFTMVAYYFSNQ 349 5789*********************************************************9888887...89********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I + +eg rvHiiDf+i G+QWp+L+q La R++gpp+lRiTg++ p++g + +eetg+rLa++A+ ++vpf+++ +a+r+e++++e+L+++ 462905134 350 TIADVLEGRPRVHIIDFGIVFGFQWPSLIQRLARRKGGPPKLRITGIDVPQPGfrPCKIIEETGKRLAEYAQMFDVPFQYQG-IASRWENINIENLKIDM 448 ************************************************9999999*******************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gE+l++n+ +++l de+ +++s+rd++L+++k+++P+v+++ + ++s+ F+ rf e l +ys+l+d+l+a++++ +e+ri +E+ llg + nv+ 462905134 449 GEVLIINCLSDMKNLGDETEDIDSARDRFLRIMKRIKPEVLILGVVNGLYSSTFFMPRFREVLFHYSSLYDMLNATVAPSHEARILIEKYLLGVDTLNVI 548 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 acegaer+er e++++W+ r +aGFk++p+++++ + +k + d + + e+ g+l+l 462905134 549 ACEGAERIERPESYKQWQVRSLKAGFKQLPINQEILQRSIN-GKKLYHDDFVIAEDTGWLYL 609 ****************************998766555.55555577*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.299	227	604	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.3E-100	253	609	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MDSPEYGDIN SNITLDYINR ILMEEDTDER DRLYQRYDAL QATEKPFYDI LGQTYPSSPN 60 ETLISSDSQL GCTHDSITSS TNFPDLPCSS FTSDLRRPQG MHLITTDWAS ELDRLSLQFR 120 RGVEEANKFI PSIESLKVDL DSNGLLVSKQ VTEGKVGQKS KNAEKTKKHP CLDLELSEAR 180 NSKNLAISTN ETIRDETFDS VLLCNAHLHR DIESLREMMA KEENENSQNQ CGGYGQGQEK 240 SRGNKQQIEA IDLRALLIQC AQALAFNNHP FASKLLKKIR HHSSPYGDGS QRLAVYLADG 300 LEARLAGTGN QIYEKLIRKR TSARDMLKAY RLFIAACPFT MVAYYFSNQT IADVLEGRPR 360 VHIIDFGIVF GFQWPSLIQR LARRKGGPPK LRITGIDVPQ PGFRPCKIIE ETGKRLAEYA 420 QMFDVPFQYQ GIASRWENIN IENLKIDMGE VLIINCLSDM KNLGDETEDI DSARDRFLRI 480 MKRIKPEVLI LGVVNGLYSS TFFMPRFREV LFHYSSLYDM LNATVAPSHE ARILIEKYLL 540 GVDTLNVIAC EGAERIERPE SYKQWQVRSL KAGFKQLPIN QEILQRSING KKLYHDDFVI 600 AEDTGWLYLI IPPNNQLSQA TIFILKTPFF KVIFGALSFA GIKPGLHLRY CAGEDDERID 660 ALNGRSNAFR VSNVSDEHIV TTPDFAFALF SPD

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MDSPEYGDIN SNITLDYINR ILMEEDTDER DRLYQRYDAL QATEKPFYDI LGQTYPSSPN  60
ETLISSDSQL GCTHDSITSS TNFPDLPCSS FTSDLRRPQG MHLITTDWAS ELDRLSLQFR  120
RGVEEANKFI PSIESLKVDL DSNGLLVSKQ VTEGKVGQKS KNAEKTKKHP CLDLELSEAR  180
NSKNLAISTN ETIRDETFDS VLLCNAHLHR DIESLREMMA KEENENSQNQ CGGYGQGQEK  240
SRGNKQQIEA IDLRALLIQC AQALAFNNHP FASKLLKKIR HHSSPYGDGS QRLAVYLADG  300
LEARLAGTGN QIYEKLIRKR TSARDMLKAY RLFIAACPFT MVAYYFSNQT IADVLEGRPR  360
VHIIDFGIVF GFQWPSLIQR LARRKGGPPK LRITGIDVPQ PGFRPCKIIE ETGKRLAEYA  420
QMFDVPFQYQ GIASRWENIN IENLKIDMGE VLIINCLSDM KNLGDETEDI DSARDRFLRI  480
MKRIKPEVLI LGVVNGLYSS TFFMPRFREV LFHYSSLYDM LNATVAPSHE ARILIEKYLL  540
GVDTLNVIAC EGAERIERPE SYKQWQVRSL KAGFKQLPIN QEILQRSING KKLYHDDFVI  600
AEDTGWLYLI IPPNNQLSQA TIFILKTPFF KVIFGALSFA GIKPGLHLRY CAGEDDERID  660
ALNGRSNAFR VSNVSDEHIV TTPDFAFALF SPD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-48	235	609	1	365	Protein SCARECROW
5b3h_A	4e-48	238	609	3	364	Protein SCARECROW
5b3h_D	4e-48	238	609	3	364	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462905134

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680688.1	0.0	scarecrow-like protein 9
Refseq	XP_022680689.1	0.0	scarecrow-like protein 9
TrEMBL	A0A368QCK8	0.0	A0A368QCK8_SETIT; Uncharacterized protein
STRING	OPUNC05G00680.1	0.0	(Oryza punctata)
STRING	GRMZM2G089636_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-150	GRAS family protein