PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462906045
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 280aa    MW: 29888.2 Da    PI: 8.5803
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462906045genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.5e-401142131100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+Ca++C+++pyf   +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela++++e
  462906045 114 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELAAVRAE 213
                7***********************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.473113214IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-40114211IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
METPEYRWCS SLLLLVFDGG LEGRGGVHGG CGGVETFVSL RELVSTQVLE DLASLTKFVN  60
QWQDHELGKK IKREAAAAAA DRMTAAWRSC SMPAAAGPGA AGAGPGSALN TITPCAACKL  120
LRRRCAQECP FSPYFSPLEP HKFAAVHKVF GASNVSKMLL EVHESQRADA ANSLVYEANL  180
RLRDPVYGCM GAILTLQQQV QALEAELAAV RAEIVRHRYR PTAAAVATVL PSSHASQLLA  240
ASAGRGLPAR PAAARTATLA VAATLDENTG IKRHFWQKEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39962171114LOB family transfactor Ramosa2.1
5ly0_B3e-39962171114LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462906045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958311e-150FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167556.14e-97LOB domain-containing protein 15-like
TrEMBLA0A452Y3K01e-96A0A452Y3K0_AEGTS; Uncharacterized protein
STRINGPavir.J00291.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.11e-58LOB domain-containing protein 13