PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462906164
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 225aa    MW: 24310.8 Da    PI: 9.1333
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462906164genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.71.7e-1531602655
    G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
               +AtPktil++m+vkgLtl h+kSHLQkYRl
  462906164 31 EATPKTILRTMGVKGLTLFHLKSHLQKYRL 60
               69***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015573.2E-103161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-133161IPR009057Homeodomain-like
SuperFamilySSF466891.97E-53262IPR009057Homeodomain-like
PfamPF143791.5E-20101146IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPSPSSAGPR VSLLPSSLSP LPLSPIVMLL EATPKTILRT MGVKGLTLFH LKSHLQKYRL  60
GKQSGKEGSE QTKDASYLLD GQSGVSVSPR VPAQDVKESQ EVKEALRAQM EVQRRLHEQV  120
EVQKRVQIRM DALQKYIDTI LENACKLVTE QFASSGFSIS DPDLPDLSPG GIMCGPNDTL  180
SSSVFNQLSV SSIDSHSPGG KPSPSGIEGP PLLLQKSPEL KRRSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462906164
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956514.11e-129protein PHR1-LIKE 2 isoform X1
RefseqXP_025804279.11e-127protein PHR1-LIKE 2-like
SwissprotQ8LAJ75e-46PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A2T7EQW81e-130A0A2T7EQW8_9POAL; Uncharacterized protein
TrEMBLA0A3L6QNP21e-130A0A3L6QNP2_PANMI; Myb family transcription factor APL-like isoform X1
STRINGSi030441m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-47G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]