PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462906295

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

ERF

Protein Properties

Length: 184aa MW: 19300.6 Da PI: 6.7907

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462906295	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.2	5.4e-20	70	119	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++ a+++++g+ 462906295 70 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 119 9*****.******954...4***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.79	69	126	IPR001471	AP2/ERF domain
SMART	SM00380	8.6E-35	69	132	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.16E-22	69	126	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.6E-32	69	127	IPR001471	AP2/ERF domain
Pfam	PF00847	6.4E-14	69	118	IPR001471	AP2/ERF domain
CDD	cd00018	7.97E-29	70	128	No hit	No description
PRINTS	PR00367	1.5E-10	70	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-10	92	108	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MCGGAIIADF VPAGSRRPAA GSSTDTISAS SFSGEHLVLH RNLSVVPFFS TSVGEDELPV 60 TPAPGRKTAY RGIRRRPWGR WAAEIRDPRK GARVWLGTYA TPEDAARAYD VAAREIRGAK 120 AKLNFPEAPP GRRAGGRGEL RVLPGGDDCG DAAGLHAFLG LEDGAAGEGG GDVEAWDAVD 180 LMFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-20	70	126	6	63	ATERF1
3gcc_A	6e-20	70	126	6	63	ATERF1
5wx9_A	6e-20	70	127	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:9159183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462906295

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269\|PubMed:18836139, ECO:0000269\|PubMed:9159183}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064397	2e-76	BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds.
GenBank	BT087391	2e-76	BT087391.1 Zea mays full-length cDNA clone ZM_BFb0059P19 mRNA, complete cds.
GenBank	EU951894	2e-76	EU951894.1 Zea mays clone 1062095 ethylene responsive element binding protein 2 mRNA, complete cds.
GenBank	EU956072	2e-76	EU956072.1 Zea mays clone 1556883 mRNA sequence.
GenBank	HQ858761	2e-76	HQ858761.1 Zea mays clone UT1602 AP2-EREBP transcription factor mRNA, partial cds.
GenBank	JX469916	2e-76	JX469916.1 Zea mays subsp. mays clone UT3172 MYB-related transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962330.1	2e-61	ethylene-responsive transcription factor ERF071
Swissprot	P42736	2e-33	RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBL	K3Z9V8	4e-60	K3Z9V8_SETIT; Uncharacterized protein
STRING	Si023329m	6e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	2e-32	ethylene-responsive element binding protein

Publications ? help Back to Top
Bueso E, et al. The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene. Plant J., 2007. 52(6): p. 1052-65 [PMID:17931347] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen YC, et al. Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance. Sci Rep, 2014. 4: p. 5584 [PMID:24998294] Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis. New Phytol., 2015. 208(2): p. 442-55 [PMID:25988998] Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Sci., 2015. 236: p. 37-43 [PMID:26025519] Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Liu W, et al. Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency. Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868 [PMID:28390898] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474]