PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462906606
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 130aa    MW: 14247.2 Da    PI: 6.8903
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462906606genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.84.9e-1879128248
      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvlls 48 
                l++ w++q   i+++t+fk+h+lPlarikki+kad dv++i+ eaPv+++
  462906606  79 LQALWSSQlaeIKQTTEFKHHSLPLARIKKIMKADSDVQRIAGEAPVVFA 128
                8999**9988899************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.3E-1162129IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-1491129IPR009072Histone-fold
PfamPF008081.4E-7100128IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVTRLGMFSS SRLSLLGIMV NEGADEPPAS EAPSAGSALP RVTHDAPVCP YIQPQLADEH  60
QVAPKQAQQP HHDHQKQELQ ALWSSQLAEI KQTTEFKHHS LPLARIKKIM KADSDVQRIA  120
GEAPVVFANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-1685128245NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462906606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820812.13e-33nuclear transcription factor Y subunit C-4-like
TrEMBLA0A3L6PNJ32e-35A0A3L6PNJ3_PANMI; Uncharacterized protein
STRINGPavir.Fa02054.1.p5e-35(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-19nuclear factor Y, subunit C2