PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462906609

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 214aa MW: 24154.1 Da PI: 5.0968

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462906609	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	138.2	2.2e-43	89	185	2	95
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 l +fw+ q i+++t+fkn +lPlarikki+kad dv++is eaP++++kace+fi eltlr w ha+enkrrtl+k+di++a++rt++fdf+v 462906609 89 LLAFWSGQlaeIQQTTKFKNYNLPLARIKKIMKADSDVQRISGEAPMVFAKACEMFIQELTLRGWHHAQENKRRTLQKNDITEAIARTEVFDFMVPS 185 568999988899*******************************************************************************9855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.25E-29	80	182	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.5E-34	102	173	IPR009072	Histone-fold
Pfam	PF00808	6.0E-21	110	173	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MRLRHWVAGC VFPFLSDWDQ IMVNEGVTNN DASEDQPSAS AAPSAGASLP TVIQDAPVCA 60 VIQPQLADEH QVASKQARQP HHDHQKQELL AFWSGQLAEI QQTTKFKNYN LPLARIKKIM 120 KADSDVQRIS GEAPMVFAKA CEMFIQELTL RGWHHAQENK RRTLQKNDIT EAIARTEVFD 180 FMVPSDEKKG MSVPPNTTVQ EDDDDPYANY YECN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-42	96	183	3	90	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462906609

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321034.1	2e-56	nuclear transcription factor Y subunit C-3
Swissprot	Q8LCG7	2e-45	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A3L6PNJ3	1e-74	A0A3L6PNJ3_PANMI; Uncharacterized protein
STRING	Pavir.Fa02054.1.p	7e-74	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19726	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-47	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]