PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907069
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 294aa    MW: 30962.4 Da    PI: 6.5143
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907069genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.3e-30217275259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg Hnh+
  462907069 217 PDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCAEDKSILITTYEGAHNHN 275
                69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.657211277IPR003657WRKY domain
SuperFamilySSF1182905.1E-27212277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30212277IPR003657WRKY domain
SMARTSM007742.8E-35216276IPR003657WRKY domain
PfamPF031062.2E-26218274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEVAVERPPV VKEERMADAK QDMVATIGSA LPIVFESFQQ SGSMKPEGGG SRLEAARAEM  60
GEVREENERL KAALSRIVSD YKSLKMHFLD VVKVHDEKLP AEPKAPAPVA ADDDLVFLSL  120
GTRGGANGGA GRKGGHESHL SLGLGFTRAG SSLAPSAADD DKASAGPVLN LSSDSNSSAD  180
GDAAKPAANQ AAAPGESSRK SPSGGAGEDE CDTPTMPDGC QWRKYGQKIS KGNPCPRAYY  240
RCTVAPNCPV RKQVQRCAED KSILITTYEG AHNHNLPPAA TAMAXXXXXP PPRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-222162771777Probable WRKY transcription factor 4
2lex_A8e-222162771777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907069
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860063e-61BT086006.1 Zea mays full-length cDNA clone ZM_BFc0097G19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.11e-106probable WRKY transcription factor 72
SwissprotQ9LXG89e-56WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A2T7DS731e-106A0A2T7DS73_9POAL; Uncharacterized protein
STRINGPavir.J22708.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-42WRKY DNA-binding protein 72