PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907093
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 217aa    MW: 23651.3 Da    PI: 7.271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907093genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-3065121259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ ++eitY+g+Hnh+
  462907093  65 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFITEITYKGRHNHP 121
                8****************************************.***************8 PP
2WRKY32.32e-10197217121
                ---SS-EEEEEEE--TT-SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                ldDgy+WrKYGqK+vkg++ p
  462907093 197 LDDGYRWRKYGQKVVKGNPRP 217
                59****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2761123IPR003657WRKY domain
SuperFamilySSF1182901.7E-2463123IPR003657WRKY domain
SMARTSM007744.9E-3264122IPR003657WRKY domain
PfamPF031061.0E-2365121IPR003657WRKY domain
PROSITE profilePS5081122.91766123IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-11182217IPR003657WRKY domain
SuperFamilySSF1182902.35E-8190217IPR003657WRKY domain
PROSITE profilePS5081115.353192217IPR003657WRKY domain
PfamPF031063.7E-6198217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQPYAPSYLQ PDQPPQPWPP RATMPSGSSL LPSNFSFLPT APHHHHHAGA SLHAPAPAVI  60
EQPAKDGYSW RKYGQKQLKD AESPRSYYKC TRDGCPVKKV VERSFDGFIT EITYKGRHNH  120
PRPPQRGADD VVPAGVAEEA AGGGPASDDD DDDVLGNEDR DGDEGRPAAM GAGGEGGQRV  180
VKKPKIILQT PSDVDLLDDG YRWRKYGQKV VKGNPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-15641241475WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907093
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638037e-74AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402538.12e-82probable WRKY transcription factor 26
SwissprotQ6VWJ68e-45WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A1D6L5F96e-81A0A1D6L5F9_MAIZE; Putative WRKY transcription factor 10
STRINGGRMZM2G008029_P011e-81(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-39WRKY DNA-binding protein 58