PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462907434

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 179aa MW: 18719.3 Da PI: 8.7514

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462907434	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	37	55	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 ++C+ Cg++F++ L H 462907434 37 FQCKTCGRRFPTFQALGGH 55 89*********98777555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.02E-7	35	105	No hit	No description
PROSITE profile	PS50157	9.224	37	64	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.8E-9	37	58	IPR007087	Zinc finger, C2H2
SMART	SM00355	51	37	57	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.1E-9	82	107	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.725	83	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.3	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MEKETRAATA RVVVLLSQQH RLHGGVGSSV QRGGRLFQCK TCGRRFPTFQ ALGGHRASLG 60 LRKPEAAHVH DGEWARAAGP RTHGCPVCGV EFAVGQALGG HMRRHRAAAA RGSRAVTPEA 120 CISESTASAK ADDDGGDCVD GICLELNLTP SASCAKCQNR AGLGATEPGA HKFVLDCIL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462907434

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805950.1	2e-45	zinc finger protein ZAT12-like
TrEMBL	A0A3L6SWL2	6e-46	A0A3L6SWL2_PANMI; Zinc finger protein ZAT12-like
STRING	Pavir.J32634.1.p	8e-45	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6282	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-20	C2H2 family protein