PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907571
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HB-other
Protein Properties Length: 295aa    MW: 30889.3 Da    PI: 8.8435
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907571genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.46.5e-051541644656
                HHHHHHHHHHH CS
   Homeobox  46 vWFqNrRakek 56 
                vWFqNrRa+ k
  462907571 154 VWFQNRRARTK 164
                9********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF021838.5E-10166199IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-18166209IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLGLAAPA PQQPSFFYPG NVVALPEREV SPAAAEERRC SPAGSPVSSG  60
SGSGKRAAER SAGSGDEDDD GGARKKLRLS KDHARGVLQG APHPHSEAEG GVGEQPGSPA  120
AAGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXEVWFQNRR ARTKLKQTEV DCEYLKRWCE  180
QLAEENRRLG KELADLRALN AVAPSPAPAP LTTLSMCLSC RRVSSSSSSS SPNAAMNVLA  240
THQHGHHAAA NAGGLASPAT AMPGHRQFFC GFREAGAAAY GSSSSGLAKA VKAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681203e-58EU968120.1 Zea mays clone 314746 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.18e-74homeobox-leucine zipper protein HOX28-like
TrEMBLA0A2S3HLY52e-72A0A2S3HLY5_9POAL; Uncharacterized protein
STRINGPavir.Da02255.1.p8e-68(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-26homeobox from Arabidopsis thaliana