PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907574
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 146aa    MW: 15906.6 Da    PI: 8.9091
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907574genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1870117956
                HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  462907574  70 SNQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 117
                5799******************************************98 PP
2HD-ZIP_I/II105.25.2e-3464133171
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd 71 
                  +kk+rls +q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+  
    462907574  64 RKKLRLS-NQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCSG 133
                  6999998.69*********************************************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.1E-1364123IPR001356Homeobox domain
CDDcd000861.75E-1364120No hitNo description
PROSITE profilePS5007114.5670119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-1770117IPR009057Homeodomain-like
SuperFamilySSF466891.41E-1670128IPR009057Homeodomain-like
PfamPF000461.1E-1570117IPR001356Homeobox domain
PRINTSPR000311.4E-59099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000311.4E-599115IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDPDHQAGTT MRASTSPDSA AALSSGDSGS NKREREELLE RTGSGGVRGA GSDEEDGADG  60
TGGRKKLRLS NQAAVLEECF KTHSTLNPKQ KVALANRLGL RPRQVEVWFQ NRRARTKLKQ  120
TEVDCEYLKR CSGESPALQS IREMTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907574
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932886e-92FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964497.19e-65homeobox-leucine zipper protein HOX2
SwissprotQ5VPE32e-40HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U862e-40HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLK3XYL12e-63K3XYL1_SETIT; Uncharacterized protein
STRINGSi007019m3e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-35homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]