PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907733
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29363.5 Da    PI: 5.4088
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907733genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1956109456
                -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  462907733  56 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 109
                458**************9899********************************9 PP
2HD-ZIP_I/II124.64.5e-4054147193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy++L++++dal+++ e+L++e+++L+++l+e
    462907733  54 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYATLRAKFDALRDRVESLKQEKQALASQLRE 147
                  69******************999********************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.72E-1931113IPR009057Homeodomain-like
PROSITE profilePS5007117.60550111IPR001356Homeobox domain
SMARTSM003898.6E-2053115IPR001356Homeobox domain
CDDcd000861.64E-1755112No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1956118IPR009057Homeodomain-like
PfamPF000463.9E-1756109IPR001356Homeobox domain
PRINTSPR000316.5E-78291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000316.5E-791107IPR000047Helix-turn-helix motif
PfamPF021832.3E-14111152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDRPDHHNQF FMPPQSLQQQ QQQLCVPMMD EHSPPSFLAG RGGGGAAPGT GRGERKRRFT  60
EEQIRSLESM FHAHHAKLEP REKAELAREL GLQPRQVAIW FQNKRARWRS KQLEHDYATL  120
RAKFDALRDR VESLKQEKQA LASQLRELSE RLRERDDRGR SGGGATTATT EASSSSCNNN  180
GGEEDDDKRH VLARCVDMEP PEMSCVLGGA CATPADVSVE STECDDGHHL DYDDGFLPDS  240
FCAATPELWE PWPLVEWNAV A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907733
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826405.11e-114homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK02e-94HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-94HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A3L6FRG11e-114A0A3L6FRG1_MAIZE; Homeobox-leucine zipper protein HOX22
STRINGPavir.Ga00670.1.p1e-111(Panicum virgatum)
STRINGSi010550m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-33homeobox 7