PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907870
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 807aa    MW: 89106.1 Da    PI: 6.0963
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907870genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS195.72.8e-603415362199
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cA a+s+ ++e+aqa++++l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P++++++++aN a
  462907870 341 KQLLFDCALALSEYNAEEAQAIITQLRQIVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQILFEICPCFRLGFMAANYA 437
                589*****************************************************************9...89999*********************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                Ilea +geervHiiDfdi+qG Q+++L+q L + +++p  lRiTgv++pe++      l+ +g+rL+k+Ae +gv+fef++ v  ++ d+++ +L+++p+
  462907870 438 ILEACKGEERVHIIDFDINQGSQYITLIQFLKNNANKPRLLRITGVDDPETVqrPIGGLRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCHPR 536
                **************************************************99878899***********************.799***********9985 PP
2GRAS271.13.7e-83538787120369
       GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217
                + G Q+++L+q L + +++p  lRiTgv++pe++      l+ +g+rL+k+Ae +gv+fef++ v  ++ d+++ +L+++pgEal+Vn+++qlh+l+des
  462907870 538 NFGSQYITLIQFLKNNANKPRLLRITGVDDPETVqrPIGGLRLIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCHPGEALVVNFAFQLHHLPDES 636
                579*****************************99888899***********************.799********************************* PP

       GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                vs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+
  462907870 637 VSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRA 736
                **************************************************************************************************** PP

       GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                r+ +aGFkp p+++++ + +++ll+ + ++ y+ ee++g l +gW +++L+ 
  462907870 737 RMAMAGFKPCPFNSNVISGIRSLLKSYCDR-YKFEEDHGGLHFGWGEKTLIL 787
                ****************************66.*****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.941314773IPR005202Transcription factor GRAS
PfamPF035149.8E-58341536IPR005202Transcription factor GRAS
PfamPF035141.3E-80538787IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MTKTMGALSV DAPVGCRKWE QQQRSRSCGC RRGSAAEPPV VLTAPHRAYD IGPRCHSLSP  60
TNQPSHHPSS FLPLLLLPSP DFPSPFRAPA PLLSSSSHLA GLRFCSRGVT LISPLYVLLH  120
LTPLKSITIN SARGSYRPVK AIASSIDPST AYSDNLYIHK FAAPSSNFAP RRFPSDSQLF  180
RYDPEPYTPE YGHMGFTGAP SAAFQNSLCS QQASLTPYHI TDDGRSTAVA DTQTNSCSDA  240
AEDSPVLSNI SQQNSQSVSD CQSSGIEVEF DEEDMRLKLQ ELEHALLDDG NDILFEISQA  300
GSINDEWADP MKNELIPSSP KESESSISCA VSNNRATRTP KQLLFDCALA LSEYNAEEAQ  360
AIITQLRQIV SIQGDPSQRI AAYLVEGLAA RIVASGKGIY KALTCKDPPT LYQLSAMQIL  420
FEICPCFRLG FMAANYAILE ACKGEERVHI IDFDINQGSQ YITLIQFLKN NANKPRLLRI  480
TGVDDPETVQ RPIGGLRVIG QRLEKLAEDC GVSFEFRAVG ANIGDVTPAM LDCHPRNNFG  540
SQYITLIQFL KNNANKPRLL RITGVDDPET VQRPIGGLRL IGQRLEKLAE DCGVSFEFRA  600
VGANIGDVTP AMLDCHPGEA LVVNFAFQLH HLPDESVSIM NERDQLLRMV KGLQPKLVTL  660
VEQDANTNTA PFLTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE  720
GPDRVERYEV AGKWRARMAM AGFKPCPFNS NVISGIRSLL KSYCDRYKFE EDHGGLHFGW  780
GEKTLILQTF HADHPPLAHG LQQQAVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3435978622369GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5347040.0EF534704.1 Aeluropus littoralis scarecrow gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ31e-108SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A3L6RFL20.0A0A3L6RFL2_PANMI; Scarecrow-like protein 1
STRINGSi000832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-110SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]