PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907897
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 139aa    MW: 15649.8 Da    PI: 10.701
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907897genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.79e-3261119159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver ae p++v++tYeg+H h+
  462907897  61 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEAPRMVITTYEGRHVHS 119
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-3346119IPR003657WRKY domain
SuperFamilySSF1182902.35E-2853120IPR003657WRKY domain
PROSITE profilePS5081128.32356121IPR003657WRKY domain
SMARTSM007743.2E-3561120IPR003657WRKY domain
PfamPF031064.5E-2562118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MRNQDKQRGK GAALTAGSGG APALGVGAVR MKKSGSGGGK ARRKVREPRF CFKTMSDVDV  60
LDDGYKWRKY GQKVVKNTQH PRSYYRCTQD NCRVKKRVER LAEAPRMVIT TYEGRHVHSP  120
SRDEDDDAAR ANAEMSFIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2652118874Probable WRKY transcription factor 4
2lex_A3e-2652118874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907897
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369001e-127BT036900.1 Zea mays full-length cDNA clone ZM_BFb0146L21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132878.17e-74uncharacterized protein LOC100194371
SwissprotQ9SVB71e-54WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1E5WH292e-76A0A1E5WH29_9POAL; Putative WRKY transcription factor 13
STRINGGRMZM2G151444_P013e-73(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.19e-49WRKY DNA-binding protein 13