PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462907956
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 218aa    MW: 23774.1 Da    PI: 8.9627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462907956genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1952102356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr ++ +g+++AeIrd + ng   r++lg+f+t+eeAa a+++a+ +++g+
  462907956  52 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTPEEAALAYDQAAFAMRGA 102
                9*******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.1351109IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2351110IPR016177DNA-binding domain
SMARTSM003806.1E-3751115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3151109IPR001471AP2/ERF domain
PRINTSPR003677.9E-115263IPR001471AP2/ERF domain
PfamPF008471.7E-1452101IPR001471AP2/ERF domain
CDDcd000183.62E-2352111No hitNo description
PRINTSPR003677.9E-117591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSNQQPPPLS TGIVSFLARR AMSSSSSSEA PAAAVTMMMQ EEEEEEEKGE AYRGVRKRPW  60
GKFAAEIRDS TRNGVRVWLG TFDTPEEAAL AYDQAAFAMR GAAAVLNFPV DRVRQSMEAM  120
PMDNLAAGVS PVVALKRRHS MSSRRRRIKP KSAVMELEDL GPEYLEALLG ASEQQQHPPP  180
PPPLGAGATT PSDQVLLLGS LLLVRFATNQ SNKQLLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2948110264ATERF1
3gcc_A7e-2948110264ATERF1
5wx9_A3e-28521091572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462907956
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699809e-55BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155481.12e-57ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y96e-50ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1D6RNS54e-56A0A1D6RNS5_WHEAT; Uncharacterized protein
TrEMBLA0A3B6HYA15e-57A0A3B6HYA1_WHEAT; Uncharacterized protein
TrEMBLA0A446RBU35e-57A0A446RBU3_TRITD; Uncharacterized protein
TrEMBLA0A446RBU44e-57A0A446RBU4_TRITD; Uncharacterized protein
TrEMBLA0A453CKT84e-56A0A453CKT8_AEGTS; Uncharacterized protein
STRINGTraes_4AL_F18648C49.18e-58(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-46ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]