PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908043
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 466aa    MW: 49066.7 Da    PI: 6.7435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908043genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000323063381754
                HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++   L++l+ +      +K + a++L +++eYIk L
  462908043 306 GDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 338
                55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-4299343No hitNo description
SuperFamilySSF474593.01E-10299357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-8299351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-4392417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGDHAEMLHA APAMYNGGGG AAPHGGAATC STELAGFSTW SSALAASYDL AAEAGKAKSA  60
ATTASSESPG NNSSVTFQEP TGVADATGVQ QPLASFTDWT HLMNNSGVTL HGFLQDGQHD  120
MSSRTDQQHS HINAPSLMNP SSNNLTLQGH HEQDHGHHQL LTSLGSELLL SPTSPYGGIQ  180
SSLLRSLMEP TAGKPAALPG FQHYDQYQQM GQAPPLQFTN DAAFWNPSAG FGVPAAAPAQ  240
ASSMRAAKPS PAPRAATLAL KSAMEGVGES SSIITKKGNG EPAFKKPRLE TPSPLPTFKV  300
RKEKLGDRVT ALQQLVAPFG KTDTASVLHE TIEYIKFLHD QVSALSAPYL KNGHQVPHLK  360
SSSPDKSKDS HGEISLKGRG LCLVPISSTF AVASETDTAS VLHETIEYIK FLHDQVSSSS  420
PDKSKDSHGE ISLKGRGLCL VPISSTFAVA SEVPVDFWTP FGANFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751933e-93EU975193.1 Zea mays clone 484008 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-41bHLH family protein