PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462908291

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 226aa MW: 25417.3 Da PI: 8.2868

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462908291	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	53.4	7.3e-17	2	41	8	47
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l+ 462908291 2 LRRRCTEECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQ 41 89************************************98 PP
2	DUF260	57.6	3.7e-18	86	138	48	100
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ +lal+k+e 462908291 86 ELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQMQLALAKAE 138 57999********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.587	1	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-16	2	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-16	86	136	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
LLRRRCTEEC VFAPYFPPED PHKFAIVHKV FGASNVSKML QVRRSILCLL ARFVSMPQSF 60 SYFIHACHAW LIQLARQLTY PPWTIELPAQ QRADAVSSLV YEANARMRDP VYGCVGAISY 120 LQQQVSQLQM QLALAKAEIL CVQMQQNDGQ QGHPTAAPAS AKQQFQQQEM DGDAYGSMFM 180 QNGLMMNTLN SSTAHQQQHL LGSLSSSRST AMMLQEACLK KESLWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-35	1	158	17	127	LOB family transfactor Ramosa2.1
5ly0_B	8e-35	1	158	17	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462908291

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	7e-65	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661028.1	2e-78	LOB domain-containing protein 12
Swissprot	Q8LBW3	5e-53	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1E5V6L6	1e-83	A0A1E5V6L6_9POAL; LOB domain-containing protein 12
STRING	Si011647m	2e-78	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-45	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]