PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462908312

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 225aa MW: 24152.5 Da PI: 8.7666

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462908312	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.4	6.6e-16	17	56	1	40
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGas 40 +CaaCk +rrkCa+dC+lapyfpa++p+++a+v+++FG + 462908312 17 RCAACKNQRRKCAQDCILAPYFPASDPQRYACVKRIFGSR 56 6*************************************86 PP
2	DUF260	118.2	4.8e-37	62	162	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk +rrkCa+dC+lapyfpa++p+++a+v+++FGasn+ +++++lp ++r +a+++++ eA+ r++dPvyG++gvi +lq +++ +++ela+++++ 462908312 62 RCAACKNQRRKCAQDCILAPYFPASDPQRYACVKRIFGASNIARMIQSLPVHDRGKAADTMATEAHRRVQDPVYGCAGVIARLQDEIRAVQSELARTEAQ 161 6**********************************************************************************************99987 PP DUF260 101 l 101 + 462908312 162 I 162 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.3E-13	17	56	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	23.754	61	162	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-36	62	159	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSTSANTGAV AANPGRRCAA CKNQRRKCAQ DCILAPYFPA SDPQRYACVK RIFGSRSRQP 60 GRCAACKNQR RKCAQDCILA PYFPASDPQR YACVKRIFGA SNIARMIQSL PVHDRGKAAD 120 TMATEAHRRV QDPVYGCAGV IARLQDEIRA VQSELARTEA QIAVHAAAAA GAQPAAGNQL 180 NAQLVQGPMQ QQGDALMVQE PFPALDALLN DVHAGANLFD DDMGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	63	176	12	125	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	63	176	12	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462908312

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806770.1	1e-66	LOB domain-containing protein 24-like
Swissprot	P59468	3e-38	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2S3HD56	3e-65	A0A2S3HD56_9POAL; Uncharacterized protein
TrEMBL	A0A3L6TJP8	2e-65	A0A3L6TJP8_PANMI; Uncharacterized protein
STRING	Pavir.J09684.1.p	7e-62	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-37	LOB domain-containing protein 24