PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908501
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 114aa    MW: 12600.2 Da    PI: 6.9308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908501genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-052446123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C++ F ++  L  H++ H
  462908501 24 FVCTYCDRKFYTSQALGGHQNAH 46
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.56E-81763No hitNo description
PROSITE profilePS5015711.0942451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEQELDLQLS LSHSPLPEEP PGFFVCTYCD RKFYTSQALG GHQNAHKYER TLAKRRREIA  60
AAMRKNGGAV TSCRPGDAAG VETETERMRQ LMGAHPGLPN AVESTGELDL SLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908501
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056866e-45AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03.
GenBankAP0057476e-45AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149656e-45AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126176e-45CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679311.12e-33uncharacterized protein LOC106804537
TrEMBLA0A1E5UY222e-35A0A1E5UY22_9POAL; Uncharacterized protein
STRINGPavir.Ib01788.1.p8e-33(Panicum virgatum)
STRINGSi039631m6e-33(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-16zinc finger protein 2