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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 462908898 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family | LBD | ||||||||
| Protein Properties | Length: 229aa MW: 25244.6 Da PI: 4.9132 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 60.9 | 3.4e-19 | 28 | 88 | 27 | 87 |
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87
++fa+vhk+FGasn +kll++++ ++r+da+ +++yeA+ r+++PvyG+++ il+lq+q
462908898 28 IENFAVVHKVFGASNASKLLHQVSLDKRQDAVLTICYEAKERLSNPVYGCASYILALQEQR 88
589*******************************************************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 9.636 | 1 | 102 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 1.2E-18 | 24 | 88 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 229 aa Download sequence Send to blast |
MVGRTMVAIQ EEEEEEEVVA GRVGREGIEN FAVVHKVFGA SNASKLLHQV SLDKRQDAVL 60 TICYEAKERL SNPVYGCASY ILALQEQRRG TFSLLSCHLE TTCATHSLLT MGDKNKPFSC 120 HLQEYLEVSE KKEGSSSAPP QPPSDPPAEP ILDVVPVEAP LVDIAPLAMI PPPLEQEPLA 180 LPEFIEISSD DEDASSARPR RRYLPGGRAD LRPKYFGVFS GTRSRSRQN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 3e-13 | 29 | 87 | 38 | 96 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 3e-13 | 29 | 87 | 38 | 96 | LOB family transfactor Ramosa2.1 |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 462908898 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G03760.1 | 2e-22 | LOB domain-containing protein 20 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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