PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909245
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 292aa    MW: 32905.5 Da    PI: 10.0822
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909245genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.8e-272877251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rie+++ rqvtfskRr g++KKA+ELSvLCdaev +i+fs++g+ly ++s
  462909245 28 RIEDTTSRQVTFSKRRSGLMKKASELSVLCDAEVGLIVFSPRGRLYQFAS 77
               8***********************************************86 PP
2SRF-TF86.31.8e-27149198251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                rie+++ rqvtfskRr g++KKA+ELSvLCdaev +i+fs++g+ly ++s
  462909245 149 RIEDTTSRQVTFSKRRSGLMKKASELSVLCDAEVGLIVFSPRGRLYQFAS 198
                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-361978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.1561979IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-262182IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-272141IPR002100Transcription factor, MADS-box
PfamPF003191.2E-262875IPR002100Transcription factor, MADS-box
CDDcd002652.81E-302977No hitNo description
PRINTSPR004044.0E-274156IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-275677IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-36140199IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.156140200IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-26142203IPR002100Transcription factor, MADS-box
PROSITE patternPS003500142196IPR002100Transcription factor, MADS-box
PfamPF003191.2E-26149196IPR002100Transcription factor, MADS-box
CDDcd002652.81E-30150198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVATAMAAQI EAPDGKKKGR RGRREMRRIE DTTSRQVTFS KRRSGLMKKA SELSVLCDAE  60
VGLIVFSPRG RLYQFASETE YVSSYSFFFP AGSVPSPSPS LARSPSFLFR QLDDDPSIDP  120
SMVATAMAAQ IEAPDGKKKG RRGRREMRRI EDTTSRQVTF SKRRSGLMKK ASELSVLCDA  180
EVGLIVFSPR GRLYQFASET EYVSSYSFFF PAGSVPSPSP SLARSPSFLF RQLDDDPLQE  240
TIDKYLQYTK GTPANLKVDL SGIEQKKLMD QISELREKER NLMKENEMLR DQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A8e-1621198258Myocyte-specific enhancer factor 2A
3mu6_B8e-1621198258Myocyte-specific enhancer factor 2A
3mu6_C8e-1621198258Myocyte-specific enhancer factor 2A
3mu6_D8e-1621198258Myocyte-specific enhancer factor 2A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279LREKER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040495e-51AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067205e-51AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149585e-51AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-51CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP0C5B26e-30MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A1E5VTG72e-40A0A1E5VTG7_9POAL; MADS-box protein SOC1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-23AGAMOUS-like 20
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Bai Z, et al.
    The impact and origin of copy number variations in the Oryza species.
    BMC Genomics, 2016. 17: p. 261
    [PMID:27025496]
  4. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  5. Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
    Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice.
    Front Plant Sci, 2016. 7: p. 1270
    [PMID:27621738]