PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909266
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 207aa    MW: 23357.7 Da    PI: 8.8013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909266genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.79e-57221491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdee++++yL++k+ ++ ++   vi evd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++ +g lv
  462909266  22 LPPGFRFHPTDEEIISHYLTPKALNRLFTS-GVIGEVDLNKCEPWDLPAKAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFKGRGVLV 120
                79************************9998.99***************99999*********************************************** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g+kktLvfy+grap+gekt Wvmhe+rle
  462909266 121 GMKKTLVFYRGRAPRGEKTGWVMHEFRLE 149
                **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6415172IPR003441NAC domain
PROSITE profilePS5100559.26122172IPR003441NAC domain
PfamPF023651.0E-2923148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSEVSGINQA EVEDQAAGQL ELPPGFRFHP TDEEIISHYL TPKALNRLFT SGVIGEVDLN  60
KCEPWDLPAK AKMGEKEWYF FCHKDRKYPT GTRTNRATES GYWKATGKDK EIFKGRGVLV  120
GMKKTLVFYR GRAPRGEKTG WVMHEFRLEG RLPHPLPRSA KDEWAVCKVF NKELAARTAP  180
MAVAGAELER VGSLGFIADF LDNAELR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-55131778170NO APICAL MERISTEM PROTEIN
1ut4_B9e-55131778170NO APICAL MERISTEM PROTEIN
1ut7_A9e-55131778170NO APICAL MERISTEM PROTEIN
1ut7_B9e-55131778170NO APICAL MERISTEM PROTEIN
3swm_A9e-551317711173NAC domain-containing protein 19
3swm_B9e-551317711173NAC domain-containing protein 19
3swm_C9e-551317711173NAC domain-containing protein 19
3swm_D9e-551317711173NAC domain-containing protein 19
3swp_A9e-551317711173NAC domain-containing protein 19
3swp_B9e-551317711173NAC domain-containing protein 19
3swp_C9e-551317711173NAC domain-containing protein 19
3swp_D9e-551317711173NAC domain-containing protein 19
3ulx_A9e-55131736169Stress-induced transcription factor NAC1
4dul_A9e-55131778170NAC domain-containing protein 19
4dul_B9e-55131778170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563950.0EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465330.11e-134NAC domain-containing protein 79
SwissprotQ9FK447e-89NAC87_ARATH; NAC domain-containing protein 87
TrEMBLC5X1Q21e-132C5X1Q2_SORBI; Uncharacterized protein
STRINGSb01g036590.11e-133(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.25e-92Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]