PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462909284

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 352aa MW: 38959.1 Da PI: 7.4804

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462909284	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110	1.2e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl 462909284 46 KPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.302	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-33	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-18	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	8.9E-11	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-25	148	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MYHQQQLQSH GHFLSSRQTY PQERHLLLQG GSVPAEPGLV LSTDAKPRLK WTPELHERFV 60 EAVNQLGGPD KATPKTIMRL MGVPGLTLYH LKSHLQKYRL SKNVHAQANG GNAKNVVSCA 120 MAMEKPPEGN GSPVSHLNLG SQTNKSVHIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQSVLEK AQETLAKQNA GSVGLETAKM QLSELVSKVS TECLQHALTG FEEIEGSQML 240 QGVQLGDGSV DSCLTACDGP QKDHDILSIS LSAHKGKQIG GMAFDQMAKE RVSEDLFLDK 300 LSRTPPSHQE RRERRDEFSM SCQAANLDLN INDTNDGPKN SKKLDLNGFS WA

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MYHQQQLQSH GHFLSSRQTY PQERHLLLQG GSVPAEPGLV LSTDAKPRLK WTPELHERFV  60
EAVNQLGGPD KATPKTIMRL MGVPGLTLYH LKSHLQKYRL SKNVHAQANG GNAKNVVSCA  120
MAMEKPPEGN GSPVSHLNLG SQTNKSVHIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQETLAKQNA GSVGLETAKM QLSELVSKVS TECLQHALTG FEEIEGSQML  240
QGVQLGDGSV DSCLTACDGP QKDHDILSIS LSAHKGKQIG GMAFDQMAKE RVSEDLFLDK  300
LSRTPPSHQE RRERRDEFSM SCQAANLDLN INDTNDGPKN SKKLDLNGFS WA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-21	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462909284

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796515.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-104	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0A9CY08	0.0	A0A0A9CY08_ARUDO; Uncharacterized protein
STRING	Si036390m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-106	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]