PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909347
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 204aa    MW: 22845 Da    PI: 10.9239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909347genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.2e-131660148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+  ++++G  +W++I+r      ++k+c++rw +yl
        462909347 16 KGLWSPEEDERLASHIARFGVSSWSSIPRIRR---CGKSCRLRWMNYL 60
                     678**************************976...***********97 PP
2Myb_DNA-binding48.91.5e-1566108145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +gr++++E+el++ ++k lG+  W+ Ia++++ gR+++++k++w+
        462909347  66 KGRFSQQEEELIISLHKALGNS-WSQIAARLP-GRSDNEIKNFWN 108
                      79******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.291160IPR017930Myb domain
SuperFamilySSF466895.24E-2714107IPR009057Homeodomain-like
SMARTSM007173.7E-81562IPR001005SANT/Myb domain
PfamPF002495.9E-121660IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-211767IPR009057Homeodomain-like
CDDcd001673.51E-91960No hitNo description
PROSITE profilePS5129424.28161115IPR017930Myb domain
SMARTSM007174.9E-1565113IPR001005SANT/Myb domain
PfamPF002494.4E-1466108IPR001005SANT/Myb domain
CDDcd001674.17E-1068108No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2668115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGNPCCSE EKKLRKGLWS PEEDERLASH IARFGVSSWS SIPRIRRCGK SCRLRWMNYL  60
RPDLKKGRFS QQEEELIISL HKALGNSWSQ IAARLPGRSD NEIKNFWNAR LRKKLRQKEA  120
SSSTGCSDRK HPPPAVFNPL QVLKDGFTDS SPASSAAVDT NQGTTAAAVF LESADRAGCA  180
IAVERKHGGG WTKQRRRLLE SLGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-291311524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115RLRKKLR
2110116LRKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.16e-78myb-related protein Hv33-like
SwissprotQ8LPH62e-53MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A3L6SVX58e-78A0A3L6SVX5_PANMI; Transcription factor MYB82-like
STRINGPavir.Eb00460.1.p6e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-55myb domain protein 86