PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909566
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 209aa    MW: 23854.9 Da    PI: 10.3503
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909566genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix114.27.4e-3696181187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev+aLi++r +m+ r+++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  462909566  96 RWPKTEVHALIQLRMDMDARYQDSSPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 181
                8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002993155IPR001005SANT/Myb domain
CDDcd122032.00E-2795160No hitNo description
Gene3DG3DSA:1.10.10.604.0E-495153IPR009057Homeodomain-like
PfamPF138371.8E-2495182No hitNo description
PROSITE profilePS500907.20195153IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQQVVERQEE MQRRFLETME KREAERTARE EAWRRQEVAR LNREQDHLAQ ERAAAAAPRS  60
TPPTSGASLE LVPAAASEQH VDSGLGGELG AASSSRWPKT EVHALIQLRM DMDARYQDSS  120
PKGPLWEDIS AGMRRLGYNR SSKRCKEKWE NINKYYKKVK ESNKKRPEDS KTCPYFHQLE  180
AIRAMSSPPP PPPRLRPSLT KSTRAAGSR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909566
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550331e-114BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798832.12e-69trihelix transcription factor GTL1-like isoform X2
SwissprotQ391176e-65TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A151S7162e-71A0A151S716_CAJCA; Uncharacterized protein
STRINGGSMUA_Achr11P03520_0012e-69(Musa acuminata)
STRINGGSMUA_Achr2P11910_0012e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-38Trihelix family protein