PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462910632
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRF
Protein Properties Length: 215aa    MW: 23003.8 Da    PI: 10.7644
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462910632genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.26.1e-23123167145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                daepgrCrRtDGKkWRCsr++++++ +CErH++rgr rsrk++e 
  462910632 123 DAEPGRCRRTDGKKWRCSRDAVGDQRYCERHINRGRYRSRKHVEG 167
                79****************************************986 PP
2QLQ66.84.9e-236399137
        QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               ++FT++Q+++L++Q+l+yKy++an+PvP++Ll++i++
  462910632 63 GPFTPTQWMELEHQALIYKYFVANAPVPSNLLLPIRR 99
               59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-136399IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.8E-166498IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.1266499IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.422123167IPR014977WRC domain
PfamPF088793.2E-19124166IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEGGRDAFMG LARPPPPSCS FLGSAATSSG GPQMLSFSSN GGAGLGLSSG ASSMQGVLSR  60
VRGPFTPTQW MELEHQALIY KYFVANAPVP SNLLLPIRRS LNPWSTFGSS SSGWAQLRPG  120
TADAEPGRCR RTDGKKWRCS RDAVGDQRYC ERHINRGRYR SRKHVEGQKA TTTIAGPAMA  180
VSAGVSSHSH TVAWQQQMEG SAANAANIFQ SESTR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462910632
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827128.11e-112growth-regulating factor 8-like isoform X1
RefseqXP_025827130.11e-112growth-regulating factor 8-like isoform X3
SwissprotQ6AWY11e-86GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A0A9UY241e-111A0A0A9UY24_ARUDO; Uncharacterized protein
STRINGBRADI4G16450.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-49growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]