PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462910755
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 244aa    MW: 27030.4 Da    PI: 8.1289
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462910755genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
        462910755  61 RGRMTPNEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4264155IPR017877Myb-like domain
SuperFamilySSF466895.01E-2241113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-104168IPR009057Homeodomain-like
PROSITE profilePS5129426.05656110IPR017930Myb domain
SMARTSM007171.3E-1560108IPR001005SANT/Myb domain
PfamPF002491.7E-1561105IPR001005SANT/Myb domain
CDDcd001679.39E-1363106No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2069107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDRAGGPATV AATTCVVSTN RSSSFLLASS PSLLNLHAGL NRTGKSCRLR WVNYLHPGLK  60
RGRMTPNEER LILELHARWG NRWSRIARRL PGRTDNEIKN YWRTHMRKKA QERKRTMSPS  120
SSSSSLTYQS GYPDTSSIIG TEEQELHGGN SGCITSILKG TAPDMDVYPM DQIWMEIEAP  180
EAPSATGFDG EKTQDHAFSS LPGPLPPSAA WDYYCPPADT CWKMDDEIKM APQFGFSEGA  240
GPCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-184211037105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462910755
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321599.11e-114myb-related protein MYBAS2-like isoform X3
SwissprotQ4JL765e-99MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A1Z5R7D01e-113A0A1Z5R7D0_SORBI; Uncharacterized protein
STRINGSi023104m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.38e-50myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]