PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911125
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 239aa    MW: 26671.4 Da    PI: 9.6367
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911125genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-143781147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        462911125 37 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-173187IPR009057Homeodomain-like
PROSITE profilePS5129415.4083286IPR017930Myb domain
TIGRFAMsTIGR015578.8E-193584IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.7E-73587IPR009057Homeodomain-like
SMARTSM007175.3E-113684IPR001005SANT/Myb domain
PfamPF002491.7E-113781IPR001005SANT/Myb domain
CDDcd001678.43E-93982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVSAGTPPAQ PPQHDAAASG EDASKKVRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK  60
KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK ASKIEPNYAL  120
KTESSSIYRN SGMNATVSSW AHNSVRPIVG SPMVKVMPDF TQVYSFLGSI FDPSTSGHLQ  180
KLKEMNPIDV ETALLLMRNL SINLTSPDFE DQTYLVLLAG LANFDEMISG SVLKLESVL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911125
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0948531e-151FP094853.1 Phyllostachys edulis cDNA clone: bphyem208j03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689659.11e-128PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W33e-90RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3B6PMH21e-128A0A3B6PMH2_WHEAT; Uncharacterized protein
TrEMBLA0A3L6RPY21e-127A0A3L6RPY2_PANMI; Uncharacterized protein
TrEMBLA0A446WH291e-128A0A446WH29_TRITD; Uncharacterized protein
STRINGOB02G35240.11e-128(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-79MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]