PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911290
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 229aa    MW: 25300.6 Da    PI: 8.8451
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911290genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof101.84.3e-324188653
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg 53
                +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnv  G+
  462911290 41 PSCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVLGGA 88
               68*****************************************96554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-222488IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.1954195IPR003851Zinc finger, Dof-type
PfamPF027011.9E-274287IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLSSHCENIM PLPYAAGRRA AVQLVDHHRR YRSPTAAEVA PSCPRCDSPN TKFCYYNNYS  60
LSQPRYFCKG CRRYWTKGGS LRNVLGGAVP PWLRHRQRRR RRAVLAPVPR RGRPAGPATG  120
RHDGFGHLSA PHCPDSRAEA LGELGFFSMD QSCYDSLGFP SSTDDGISGD LMLPSTWRHR  180
PAAKYELFDP LPEDAMGLHH DGGSIAGAVD DVWSHALACQ GLEAALCRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872623e-64BT087262.1 Zea mays full-length cDNA clone ZM_BFb0021J09 mRNA, complete cds.
GenBankEU9665493e-64EU966549.1 Zea mays clone 295206 dof domain, zinc finger family protein mRNA, complete cds.
GenBankJX4284773e-64JX428477.1 Zea mays subsp. mays clone pUT3073 DOF20 C2C2-DOF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439872.14e-39uncharacterized protein LOC8072499
TrEMBLC5YYR49e-38C5YYR4_SORBI; Dof-type zinc finger protein 25
STRINGSb09g021690.11e-38(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-27Dof family protein