PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911719
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 216aa    MW: 24435.7 Da    PI: 8.8231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911719genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g          + R++k+c++rw +yl
        462911719 18 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGmhaftsmcsrLQRCGKSCRLRWINYL 75
                     678*****************************************************97 PP
2Myb_DNA-binding49.21.2e-1581125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
        462911719  81 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNTC 125
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-211378IPR009057Homeodomain-like
PROSITE profilePS5129413.411375IPR017930Myb domain
SuperFamilySSF466898.61E-2716122IPR009057Homeodomain-like
SMARTSM007171.4E-101777IPR001005SANT/Myb domain
PfamPF002494.5E-131875IPR001005SANT/Myb domain
CDDcd001675.52E-102175No hitNo description
PROSITE profilePS5129424.71476130IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2679130IPR009057Homeodomain-like
SMARTSM007171.0E-1480128IPR001005SANT/Myb domain
PfamPF002495.6E-1481125IPR001005SANT/Myb domain
CDDcd001671.01E-1083124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRHPASSGG GVQQKLRKGL WSPEEDEKLY NHIIRYGVGC WSSVPKLAGM HAFTSMCSRL  60
QRCGKSCRLR WINYLRPDLK RGSFSQQEED AIVGLHEILG NRWSQIASHL PGRTDNEIKN  120
FWNTCLKKKL RQRGIDPSTH KPISAAAATS EDQKQPADGG FIALKQQQQQ QIDGYGEALE  180
HKFLLPCHGQ QEQSMPHFDF DISRGAVVGE FNLEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271613025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911719
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117821e-112AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569634.11e-92myb-related protein Hv33
SwissprotP200271e-74MYB3_HORVU; Myb-related protein Hv33
TrEMBLF2E8R05e-92F2E8R0_HORVV; Predicted protein
STRINGBRADI2G47590.16e-92(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-71myb domain protein 86