PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911971
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 364aa    MW: 39139.5 Da    PI: 7.1442
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911971genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS87.62e-27571662108
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshlta 98 
                 +lLl+cAeav++++l++a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l +s++s+ +   s ++++a+++++ +sP++kf+h+ta
  462911971  57 LTLLLRCAEAVAADHLTEARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLLSSPSSPLRasqSRRAASAFSAYNALSPLVKFAHFTA 156
                579**********************************************************996666655443338888889999*************** PP

       GRAS  99 NqaIleaveg 108
                NqaIl+a++g
  462911971 157 NQAILQALDG 166
                *******987 PP
2GRAS82.86.1e-26253347278373
       GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 + er+ vEr llg ei+n+va  g +r+ + + +e+W++ l++aGF+pv+l  + a+qa++ll +++ +gy++ e++ +l lgWkd +L+++SaW
  462911971 253 GTAERHAVERGLLGAEIRNIVAVGGPKRTGEVR-VERWSDELRRAGFRPVSLAGSPATQARMLLGMHPLKGYTLVEDDWCLKLGWKDLSLLTASAW 347
                4589***********************998887.9************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.78730364IPR005202Transcription factor GRAS
PfamPF035146.9E-2557166IPR005202Transcription factor GRAS
PfamPF035142.1E-23253347IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
QPTTRREAKR PASPGQETEE EDELRRARGK RLQGLVVAAT TAAEGEEGTE TRGLRLLTLL  60
LRCAEAVAAD HLTEARDLLP EIAELASPFG SSPERVAAYF GDALCARVLS SYLGAYSPLL  120
SSPSSPLRAS QSRRAASAFS AYNALSPLVK FAHFTANQAI LQALDGGGGE DRNPRRARCG  180
SXXXXXXXXX XRLAGFAASL GLPFEFRPIE GKVADAAALL GGDHHGHRQR DGEATVVHWM  240
HHCLYDVTGS DAGTAERHAV ERGLLGAEIR NIVAVGGPKR TGEVRVERWS DELRRAGFRP  300
VSLAGSPATQ ARMLLGMHPL KGYTLVEDDW CLKLGWKDLS LLTASAWAPA DDAVGAARHD  360
SHES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-816234924379Protein SCARECROW
5b3h_D3e-816234924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801132.11e-138scarecrow-like protein 23
SwissprotQ9FHZ14e-89SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2T7EXI41e-138A0A2T7EXI4_9POAL; Uncharacterized protein
STRINGMLOC_62589.11e-135(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.18e-62GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]