PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911983
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 172aa    MW: 18355 Da    PI: 10.4662
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911983genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1241.3e-38241411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp +++    ++    ++           +a++sgyWkatg+dk+++++  ++e
  462911983  24 LPPGFRFHPTDEELVVHYLKKKAASLPLPV-TIIAEVDLYKFDPWELPGELR--GARVVLLQPAGP---------QAATSGYWKATGTDKPIMASsgGRE 111
                79****************************.89***************6553..344444444333.........34568*************9988888 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vg+kk Lvfy+g+ pkg kt+W+mheyrl
  462911983 112 KVGVKKALVFYRGKPPKGLKTNWIMHEYRL 141
                9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-4520147IPR003441NAC domain
PROSITE profilePS5100542.01224172IPR003441NAC domain
PfamPF023651.5E-2225141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRSMESTDSS SGSHQKPPGP APHLPPGFRF HPTDEELVVH YLKKKAASLP LPVTIIAEVD  60
LYKFDPWELP GELRGARVVL LQPAGPQAAT SGYWKATGTD KPIMASSGGR EKVGVKKALV  120
FYRGKPPKGL KTNWIMHEYR LTDAASSANT NTSRPPPGAG AGGGSSKVAS LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-432314114140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911983
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8696771e-68DQ869677.1 Aegilops tauschii NAC transcription factor NAM-D2 (NAM-D2) gene, partial cds.
GenBankHQ6303731e-68HQ630373.1 Triticum aestivum cultivar Triticale 76 NAC3 gene, complete cds.
GenBankHQ8720511e-68HQ872051.1 Triticum aestivum cultivar Shaan253 NAC transcription factor (NAC4) gene, partial cds.
GenBankKM8208901e-68KM820890.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D2 (NAM-D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463039.11e-76NAC transcription factor NAM-B2
SwissprotA2YMR05e-72NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLC5XBN13e-75C5XBN1_SORBI; Uncharacterized protein
STRINGSb02g036620.15e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.14e-54NAC domain containing protein 2