PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462912801
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 209aa    MW: 22388.8 Da    PI: 7.9419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462912801genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-131461146
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
                     rg+W++eEd +l  + +++Ggg  +W + +r+ g++Rt++ +k++w++
        462912801 14 RGPWSAEEDARLRSYMERHGGGggSWLALPRKAGLRRTDNGVKNYWNT 61
                     89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-17567IPR009057Homeodomain-like
PROSITE profilePS5129416.574967IPR017930Myb domain
SuperFamilySSF466891.33E-11970IPR009057Homeodomain-like
SMARTSM007176.7E-71365IPR001005SANT/Myb domain
PfamPF002492.9E-101461IPR001005SANT/Myb domain
CDDcd001679.97E-61663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRSPCCDKS AVKRGPWSAE EDARLRSYME RHGGGGGSWL ALPRKAGLRR TDNGVKNYWN  60
TRLKKKLFAG GGRRRGYRHD EATNAGNVDD AAPLLPLPPP PCWSSQPYAY GAMGCAGDVG  120
DHMHVGAGGV FTGMIASTNE AAAVHQSAST CYSSEPAATE LDEIFRSTGP SGGEHSDLSR  180
SSNKDMEALN WNHHIQQGES VLQNHLGVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16374KKKLFAGGGRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462912801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964229.21e-54transcription factor RAX1
TrEMBLA0A368QNY53e-53A0A368QNY5_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-23myb domain protein 87