PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462913088

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 254aa MW: 28128.3 Da PI: 8.2146

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462913088	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.9	4.6e-28	26	102	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 a+ek+wyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++ +ge +glkk+Lv+y+g+a +g+ktdW+mhe+rl 462913088 26 AGEKDWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIHDGaGGECIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 102 4788***********************************9878889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.044	1	126	IPR003441	NAC domain
Pfam	PF02365	5.1E-13	25	102	IPR003441	NAC domain
SuperFamily	SSF101941	1.02E-32	26	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEEKKPLVRT KESSGTGEAR HVVQGAGEKD WYFFCLRGRK YRNSIRPNRV TGSGFWKATG 60 IDKPIHDGAG GECIGLKKSL VYYRGSAGRG TKTDWMMHEF RLPSTSSTAA GVQDAEIWTI 120 CRIFKRNMSC NRSHQQQQLD YYYGYRYQNH QQQHYTGGGA SMASSFESTT TDTSEAHATD 180 HDQPFLLHGF LDASPADVTA TTTMKTSATI GSSQLLSSSV SGWSELTSLA RGGGSSWDEL 240 GRILEMSTDM PYCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	27	132	69	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	27	132	69	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	27	132	69	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	27	132	69	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	27	132	72	174	NAC domain-containing protein 19
3swm_B	2e-30	27	132	72	174	NAC domain-containing protein 19
3swm_C	2e-30	27	132	72	174	NAC domain-containing protein 19
3swm_D	2e-30	27	132	72	174	NAC domain-containing protein 19
3swp_A	2e-30	27	132	72	174	NAC domain-containing protein 19
3swp_B	2e-30	27	132	72	174	NAC domain-containing protein 19
3swp_C	2e-30	27	132	72	174	NAC domain-containing protein 19
3swp_D	2e-30	27	132	72	174	NAC domain-containing protein 19
4dul_A	1e-30	27	132	69	171	NAC domain-containing protein 19
4dul_B	1e-30	27	132	69	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462913088

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003829	2e-49	AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBank	AP004314	2e-49	AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBank	AP014963	2e-49	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	2e-49	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809001.1	1e-92	transcription factor JUNGBRUNNEN 1-like
TrEMBL	A0A3L6T553	5e-96	A0A3L6T553_PANMI; Transcription factor JUNGBRUNNEN 1-like
STRING	Pavir.Ca02638.1.p	9e-91	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-56	NAC domain containing protein 42