PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913356
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 224aa    MW: 24219.3 Da    PI: 7.8471
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913356genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.34e-29181331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdL  + +a ++e +fF+   +k         a+ +g+W+a+gk+k v+s   ++ 
  462913356  18 LPIGFRFRPTDEELLLHYLRRKALACPLPA-DIIPVADLARLHPWDLVPAGDAADEERFFFHLPTTK---------AAGTGVWRASGKEKLVVSPrCKRP 107
                699***************************.99**************64556678999***998665.........5689*************9877889 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg k+tLvf    ++ g+++dW+mheyrl
  462913356 108 VGAKRTLVFC---HRGGRRSDWLMHEYRL 133
                *********9...677889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4014167IPR003441NAC domain
PROSITE profilePS5100539.29318168IPR003441NAC domain
PfamPF023654.5E-2019133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEAARLRNAA GGGGLAGLPI GFRFRPTDEE LLLHYLRRKA LACPLPADII PVADLARLHP  60
WDLVPAGDAA DEERFFFHLP TTKAAGTGVW RASGKEKLVV SPRCKRPVGA KRTLVFCHRG  120
GRRSDWLMHE YRLLPAVLAA GNPFASLVNF HGAAPRADDW VVCRIFKRTK PSGRGGRGRE  180
DAEEEIPSSP SSASSCVTDN SGNVDQEEED EQSSNGSSCS DASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-241816817165NO APICAL MERISTEM PROTEIN
1ut4_B2e-241816817165NO APICAL MERISTEM PROTEIN
1ut7_A2e-241816817165NO APICAL MERISTEM PROTEIN
1ut7_B2e-241816817165NO APICAL MERISTEM PROTEIN
3swm_A3e-241816820168NAC domain-containing protein 19
3swm_B3e-241816820168NAC domain-containing protein 19
3swm_C3e-241816820168NAC domain-containing protein 19
3swm_D3e-241816820168NAC domain-containing protein 19
3swp_A3e-241816820168NAC domain-containing protein 19
3swp_B3e-241816820168NAC domain-containing protein 19
3swp_C3e-241816820168NAC domain-containing protein 19
3swp_D3e-241816820168NAC domain-containing protein 19
4dul_A2e-241816817165NAC domain-containing protein 19
4dul_B2e-241816817165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913356
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-57HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184279.12e-78NAC domain-containing protein 83-like
TrEMBLA0A0A9GFU02e-82A0A0A9GFU0_ARUDO; Uncharacterized protein
STRINGPavir.Eb03721.1.p8e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-34NAC domain containing protein 83