PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913645
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 124aa    MW: 14357 Da    PI: 7.5807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913645genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1544123187
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                ffkv+     +++  +++p kfa+++ g+   s  ++le ++g+ ++v +  +k +++ +l++GW  F +a +Lk+gD +vF+++g+
  462913645  44 FFKVM--VGDFQQ-EMTVPEKFANNFRGQ--ISEIVKLEAPDGNMYNVHV--SKDQNKLILKSGWGTFSSAYELKQGDLLVFRYTGD 123
                56666..444555.59*******888777..6778***************..9******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-1937123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-1938123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.88541124IPR003340B3 DNA binding domain
CDDcd100171.00E-1742124No hitNo description
SMARTSM010190.005544124IPR003340B3 DNA binding domain
PfamPF023624.5E-1444123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MASRDHEYDG GSGHKISSGS CCRRCRHCYE HNYWDHLDNR QKHFFKVMVG DFQQEMTVPE  60
KFANNFRGQI SEIVKLEAPD GNMYNVHVSK DQNKLILKSG WGTFSSAYEL KQGDLLVFRY  120
TGDS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913645
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758592.11e-47B3 domain-containing protein Os12g0591400 isoform X2
SwissprotQ2QMT61e-32Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A2T7EIN79e-54A0A2T7EIN7_9POAL; Uncharacterized protein
STRINGPavir.Ca02537.1.p7e-58(Panicum virgatum)
STRINGPavir.Fa02304.1.p1e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-15B3 family protein