PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913657
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 176aa    MW: 20022.4 Da    PI: 5.5811
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913657genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.78.1e-2230117298
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                fk +     ++++ +++p kf+e+++gk   +k++ l+ +sg+ W v +  +k+ ++ +l++GW++Fvka++L+e+D +vF+++g+s+f   v +f+
  462913657  30 FKFM--TGDFAKA-ISIPEKFVENFNGK--ITKEVNLKAPSGEIWHVSV--DKNADELFLKSGWEDFVKAHELQENDLLVFTFSGNSSF--EVLIFE 117
                5555..3444554.9*******999888..6779***************..**********************************9999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-2522121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.32626119IPR003340B3 DNA binding domain
CDDcd100173.74E-2128116No hitNo description
Gene3DG3DSA:2.40.330.101.0E-2428121IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-1629119IPR003340B3 DNA binding domain
PfamPF023625.9E-1929118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MMVERGCESC RKWQEHYYWE HMDVSKIRFF KFMTGDFAKA ISIPEKFVEN FNGKITKEVN  60
LKAPSGEIWH VSVDKNADEL FLKSGWEDFV KAHELQENDL LVFTFSGNSS FEVLIFEANG  120
CEKVSSLSAN KTGANMLKHS ANKANWGKHD EHYSLSDSED TTKPSQLVGS PQDATT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808344.16e-87B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT24e-67Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP45e-86A0A2T7EIP4_9POAL; Uncharacterized protein
STRINGPavir.Cb00511.1.p1e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-27B3 family protein