PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913663
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 110aa    MW: 12242.7 Da    PI: 4.233
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913663genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.6e-157881294
               HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
         B3 12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94
               +sg l + k++a ++ +++++ +tl+l d  g ++W + l   +++gry+l++GW +F ++n+L+egD++vF+ ++  +++ l++
  462913663  7 ASGFLAMDKDYALKYLSEENGAITLSLPD--GsETWVISLD-INTDGRYTLSTGWLNFIHDNRLQEGDICVFQPSEGdKNTALTF 88
               56778889999999976766765555555..5499*****3.566677*************************774436665655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.33E-12181No hitNo description
PROSITE profilePS5086312.379194IPR003340B3 DNA binding domain
SMARTSM010192.3E-4192IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-15484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-14783IPR015300DNA-binding pseudobarrel domain
PfamPF023629.4E-12888IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MDKTTVASGF LAMDKDYALK YLSEENGAIT LSLPDGSETW VISLDINTDG RYTLSTGWLN  60
FIHDNRLQEG DICVFQPSEG DKNTALTFHP LEGSFRTEGK GYMGSIWNIL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321798.18e-34B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT79e-30Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLA0A0A9DH924e-35A0A0A9DH92_ARUDO; Uncharacterized protein
STRINGSb08g019887.14e-32(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-08related to vernalization1 1