PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462913881

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 177aa MW: 19080.4 Da PI: 10.0989

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462913881	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.9	1.3e-42	24	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+++g 462913881 24 LPPGFRFHPTDEELVVHYLKKKAASLPLPV-TIIAEVDLYKFDPWELPEKASFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGG--- 119 79**************************.89***********9999999***********************************544... PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 r+pkg kt+W+mheyrl 462913881 120 ----------SRDPKGLKTNWIMHEYRL 137 ..........489***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-53	20	143	IPR003441	NAC domain
PROSITE profile	PS51005	38.915	24	177	IPR003441	NAC domain
Pfam	PF02365	2.4E-22	25	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MESTDSSSGS APPQQKPPGP APHLPPGFRF HPTDEELVVH YLKKKAASLP LPVTIIAEVD 60 LYKFDPWELP EKASFGEHEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPILASGGS 120 RDPKGLKTNW IMHEYRLTDA ASSANTSRPP PPGAGAGGGG GSSKAAASLR VRNVRTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-57	14	139	7	144	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-57	14	139	7	144	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-57	14	139	7	144	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-57	14	139	7	144	NO APICAL MERISTEM PROTEIN
3swm_A	6e-57	14	139	10	147	NAC domain-containing protein 19
3swm_B	6e-57	14	139	10	147	NAC domain-containing protein 19
3swm_C	6e-57	14	139	10	147	NAC domain-containing protein 19
3swm_D	6e-57	14	139	10	147	NAC domain-containing protein 19
3swp_A	6e-57	14	139	10	147	NAC domain-containing protein 19
3swp_B	6e-57	14	139	10	147	NAC domain-containing protein 19
3swp_C	6e-57	14	139	10	147	NAC domain-containing protein 19
3swp_D	6e-57	14	139	10	147	NAC domain-containing protein 19
4dul_A	7e-57	14	139	7	144	NAC domain-containing protein 19
4dul_B	7e-57	14	139	7	144	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462913881

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085989	1e-113	BT085989.1 Zea mays full-length cDNA clone ZM_BFc0095M07 mRNA, complete cds.
GenBank	BT086467	1e-113	BT086467.1 Zea mays full-length cDNA clone ZM_BFc0169O24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463039.1	1e-88	NAC transcription factor NAM-B2
Swissprot	A2YMR0	3e-89	NAC10_ORYSI; NAC transcription factor ONAC010
Swissprot	Q8H4S4	4e-89	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A0E0ALI9	3e-87	A0A0E0ALI9_9ORYZ; Uncharacterized protein
TrEMBL	C5XBN1	3e-87	C5XBN1_SORBI; Uncharacterized protein
STRING	OGLUM07G18780.1	5e-88	(Oryza glumipatula)
STRING	Sb02g036620.1	5e-88	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-69	NAC domain containing protein 25

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]