PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914291
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 282aa    MW: 29842.7 Da    PI: 4.9559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914291genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1382133155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P+a   +  + + a+i+  A+e++k+L+
  462914291  82 QRMTHIAVERNRRRQMNEYLAMLRSLMPEA---YVHRGDQASIVGGAIEFVKELE 133
                79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.68E-1580137No hitNo description
SuperFamilySSF474595.63E-1880154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.95881132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1582151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-1182133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1187138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSALVDTLCA PSSDAALIYD TFHAASFLFD NAAAAFCDAG IVVRPAPVQH VAEAPAAAAA  60
AAATLGDVRA RSCKSKEEAE SQRMTHIAVE RNRRRQMNEY LAMLRSLMPE AYVHRGDQAS  120
IVGGAIEFVK ELEQQLQSLE AQKRTLAHQN KARSEATMPM HTSCPNAAAA ATTTPTCVDS  180
SATTTTTSNC SSSVTEDASD SAPPFAGFFT YPQMVTGLQA LRLTVLHLTV TTLDALALYS  240
LSVKVEDECG LTTVEDIAAA VHHVLCIIDA EATAQQLLAV GQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18293RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960444e-85FP096044.1 Phyllostachys edulis cDNA clone: bphylf042a03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953510.11e-104transcription factor bHLH94
TrEMBLA0A368PQT01e-103A0A368PQT0_SETIT; Uncharacterized protein
STRINGPavir.Ab02502.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.17e-30bHLH family protein