PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914386
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 545aa    MW: 62103 Da    PI: 8.4139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914386genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11e-50361642128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                 pGfrFhPtdeelv++yL++kv++k+l++ e+i+e+diyk++PwdLp + + ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+  ++e
  462914386  36 LPGFRFHPTDEELVTFYLRRKVARKSLSI-EIIREMDIYKHDPWDLPkTGTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSSanSSE 134
                69***************************.89***************445556889**************************************977788 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  462914386 135 SIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164
                8***************************98 PP
2NAM163.11e-502363642128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                 pGfrFhPtdeelv++yL++kv++k+l++ e+i+e+diyk++PwdLp + + ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+  ++e
  462914386 236 LPGFRFHPTDEELVTFYLRRKVARKSLSI-EIIREMDIYKHDPWDLPkTGTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSSanSSE 334
                69***************************.89***************445556889**************************************977788 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  462914386 335 SIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 364
                8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5435191IPR003441NAC domain
PROSITE profilePS5100554.63335191IPR003441NAC domain
PfamPF023651.4E-2437164IPR003441NAC domain
PROSITE profilePS5100554.651235391IPR003441NAC domain
SuperFamilySSF1019416.15E-55235391IPR003441NAC domain
PfamPF023651.4E-24237364IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MVAKEYAREA MSLDKVTSDG EALIAAGDGE EDDVVLPGFR FHPTDEELVT FYLRRKVARK  60
SLSIEIIREM DIYKHDPWDL PKTGTVGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPIYSSA NSSESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPVAAA ANASPCMQEA  180
EVWTICRIFK RNITYKRQQQ QPQQEYAREA MSLDKVTSDG EALIAAGDGE EDDVVLPGFR  240
FHPTDEELVT FYLRRKVARK SLSIEIIREM DIYKHDPWDL PKTGTVGGEK EWYFFCLRGR  300
KYRNSIRPNR VTGSGFWKAT GIDRPIYSSA NSSESIGLKK SLVYYRGSAG KGTKTDWMMH  360
EFRLPLAAAT ANASPCMQEA EVWTICRIFK RNITYKRQQQ QPQQVWRQPP ADRNFQLPAE  420
SSSNTGSFES DGGDEYMNRL PGSAPAIPQH QHVSNQVNML HGGGGFFRDS VHSQQFQGQW  480
FNSLPMTVHE QKPQVNPSAM TIAFHQSNQS LATNEFYKDG YLDEIARFME INDPTPTAFY  540
DCKYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-463739119165NO APICAL MERISTEM PROTEIN
1ut4_B2e-463739119165NO APICAL MERISTEM PROTEIN
1ut7_A2e-463739119165NO APICAL MERISTEM PROTEIN
1ut7_B2e-463739119165NO APICAL MERISTEM PROTEIN
4dul_A2e-463739119165NAC domain-containing protein 19
4dul_B2e-463739119165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914386
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735391e-150AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981565.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK558e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK4AC400.0K4AC40_SETIT; Uncharacterized protein
STRINGSi036447m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-81NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]