PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914517
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 657aa    MW: 73140.5 Da    PI: 6.0781
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914517genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.3e-24125225198
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++ +++ae++      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+  + +++el+v
  462914517 125 FCKTLTASDTSTHGGFSVLRRHAEDClppldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVSGDAFIFM--RGENGELRV 221
                99*****************************7556666.59************************************************..449999*** PP

                EEE- CS
         B3  95 kvfr 98 
                +v+r
  462914517 222 GVRR 225
                **97 PP
2Auxin_resp996.6e-33251336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                 a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe+++++err+sGt++ v     ++ + W +S WrsLk
   462914517 251 ASHAVSTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFKMRFEGDEAPERRFSGTIINVGSlpaMSKSLWADSDWRSLK 336
                 789************************************************************9987522267778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-45110254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-41122240IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-21123225No hitNo description
PfamPF023621.3E-21125225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674125227IPR003340B3 DNA binding domain
SMARTSM010194.7E-21125227IPR003340B3 DNA binding domain
PfamPF065071.5E-31251336IPR010525Auxin response factor
PfamPF023099.1E-6542582IPR033389AUX/IAA domain
PROSITE profilePS5174526.374546639IPR000270PB1 domain
SuperFamilySSF542771.44E-11549623No hitNo description
PfamPF023097.6E-8593637IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAAAMDVASH GTSGMPNDAL YRELWHACAG PLVTVPRQGE RVYYFPQGHM EQLEASTHQQ  60
LDQYLPMFNL PSKILCRVVN VELRAEADSD EVYAQIMLQP EADQSELTSL DPEPQELEKC  120
TVHSFCKTLT ASDTSTHGGF SVLRRHAEDC LPPLDMSQNP PCQELVAKDL HGTEWHFRHI  180
FRGQPRRHLL TTGWSVFVSS KRLVSGDAFI FMRGENGELR VGVRRLMRQV NNMPSSVISS  240
HSMHLGVLAT ASHAVSTGTL FSVFYKPRTS RSDFIVSVNK YLEAKKQKIS VGMRFKMRFE  300
GDEAPERRFS GTIINVGSLP AMSKSLWADS DWRSLKVQWD EPSSILRPDR ISPWEAEPLD  360
SSNLQAPQPP LRNKRARPPA SPSMVTELPS AFGPWKSPSE ATRTLSFSDP QRARELFPSL  420
AASTFSSSSN IGFNTMNEPS MLNNQFYWSV RDSRADSCAA STNKVTVEKK RESGSAGCRL  480
FGIEICSAEE EALPTVTAPG LDYDQTAASV DLTSDKLSHP SDVNNSDGPA TSSERSLLES  540
QSRQVRSCTK VIMQGMAVGR AIDLTKLSGY SELCQKLEEM FDIHGELDSA LKKWQVIYTD  600
DEDDMMLVGD DPWNEFCGMV KRICIYTYEE AKQLAPKSKI PVHSDSSKLS TVNSPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033612357Auxin response factor 1
4ldw_A0.033612357Auxin response factor 1
4ldw_B0.033612357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914517
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823850.10.0auxin response factor 9-like
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A2T7CVB00.0A0A2T7CVB0_9POAL; Auxin response factor
STRINGPavir.Gb01617.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]