PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462915047

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 208aa MW: 22591 Da PI: 9.8835

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462915047	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.3	1.1e-26	19	136	1	103
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e + + + L ++ +++ewyfF++rd+ky++g+r+nra+ +gyWka 462915047 19 LPPGFRFHPTDEELVVHYLKKKAASLPLPV-TIIAEGEPLPCFFLALFFllilchgfenpllilSALFGRREWYFFTPRDRKYPNGSRPNRAAGRGYWKA 117 79***********************999.6677777666666666424566666666665543334889************************* PP NAM 86 tgkdkevlsk.kgelvglk 103 tg dk++ k + + g+k 462915047 118 TGADKPIAPKgTARPAGIK 136 *****987444456666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-30	16	130	IPR003441	NAC domain
PROSITE profile	PS51005	27.212	19	189	IPR003441	NAC domain
Pfam	PF02365	2.8E-17	20	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MVAAPEGSGR RDAEAELNLP PGFRFHPTDE ELVVHYLKKK AASLPLPVTI IAEGEPLPCF 60 FLALFFLLIL CHGFENPLLI LSALFGRREW YFFTPRDRKY PNGSRPNRAA GRGYWKATGA 120 DKPIAPKGTA RPAGIKNSTS TASPTPTAPP ARRGPRRYAS QPPHSPPAPF HAYHAFMLIS 180 LVSCVVAVGR VGALPAVQQE EQLGEGEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-46	11	138	7	117	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462915047

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:20632034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947340	8e-46	EU947340.1 Zea mays clone 339956 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623706.1	8e-55	NAC domain-containing protein 68
Swissprot	Q52QH4	7e-56	NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBL	A0A3L6QYH5	8e-54	A0A3L6QYH5_PANMI; NAC domain-containing protein 68-like
STRING	OS01T0816100-01	3e-54	(Oryza sativa)
STRING	ORGLA01G0288400.1	3e-54	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	8e-39	NAC domain containing protein 32

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Taga Y, et al. Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4. Plant Signal Behav, 2009. 4(8): p. 740-2 [PMID:19820348] Xia N, et al. Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses. Mol. Biol. Rep., 2010. 37(8): p. 3703-12 [PMID:20213512] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634] Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice. Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60 [PMID:26766411]