PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462915077

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 234aa MW: 25309.5 Da PI: 8.3528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462915077	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	65	112	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq 462915077 65 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 112 8*************************94....22445556666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.04E-10	59	116	No hit	No description
SuperFamily	SSF47459	1.44E-15	59	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	61	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-15	61	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-7	65	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	67	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MTPPSSSTFG ILLPLCARNN GKAAKKGKTA AGADESKPAG GGGDGEDEKP AYVHVRARRG 60 QATDSHSLAE RARREKINAR MELLKELVPG CSKVSGTALV LDEIINHVQS LQRQVEYLSM 120 RLAAVNPRVD FGGLDSFLTT ECGRLAGLNC KNGIDLEQVT WPEMGVHGAR HLMQLQQQFW 180 HGDLAHPHQV ASQWEKRGDG HPTVFSNSSS SLFGYDLTSS GAQQPPTSKL KTEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462915077

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040729	0.0	BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
GenBank	BT062747	0.0	BT062747.1 Zea mays full-length cDNA clone ZM_BFb0340N22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347160.1	1e-135	uncharacterized protein LOC100273300
Swissprot	Q8VZ02	3e-50	BH048_ARATH; Transcription factor bHLH48
TrEMBL	I1GXA9	1e-130	I1GXA9_BRADI; Uncharacterized protein
STRING	GRMZM2G378653_P02	1e-139	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-53	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]