PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462915083

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 199aa MW: 21258.4 Da PI: 4.2834

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462915083	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	166	182	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r n++ 462915083 166 FSCPVCYKTFNRYNNMQ 182 89*********988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.4E-4	166	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGDPYTNFLR GYYSHFIPPS NPPPVSSSSS FSSYATTYLH PPPPSPPIRE ALPLLSRLTP 60 PLTTSPPGQH HDEDVGDQKD NCKLTITSCS NSEEAADQAG EVTVALHIGL PSPGPSESPA 120 AAAASSENQE AAAEEGRRQQ EEEGGGGGDE EDGDDAMAIL IGPTQFSCPV CYKTFNRYNN 180 MQVIFAHRII IPLFFPPCA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462915083

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243261	1e-32	AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437277.1	3e-45	zinc finger protein WIP2
TrEMBL	C5Z5T1	6e-44	C5Z5T1_SORBI; Uncharacterized protein
STRING	Sb10g024040.1	1e-44	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15363	5	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-10	C2H2 family protein