PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915159
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 183aa    MW: 19697 Da    PI: 8.2179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915159genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.66.2e-16142167126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +ktelC+ + +tG C+yGd+C+FaHg
  462915159 142 FKTELCNKWEETGACPYGDQCQFAHG 167
                79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-19136174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-11138173IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601141169IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-13142167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MQEALVSPVH ADRLRSALEL KPFAFGDQRL ASPRYFGGCG GDHALFRCSS PFSPSFGFSS  60
PSPLATSVSL SPSSSASLAD DLPAKAPASP VANNRKPRAS NPTINNHGSQ RVYVDGGVKG  120
EEAKEQRASG GVELEVYNQG MFKTELCNKW EETGACPYGD QCQFAHGVAE LRPVIRHPRY  180
KTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-13142183445Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421476e-74BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
GenBankKJ7270116e-74KJ727011.1 Zea mays clone pUT3992 C3H transcription factor (C3H21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969302.12e-52zinc finger CCCH domain-containing protein 9 isoform X1
TrEMBLK3XJH74e-51K3XJH7_SETIT; Uncharacterized protein
STRINGSi002050m7e-52(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-29C3H family protein