PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915162
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 185aa    MW: 20788.4 Da    PI: 8.076
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915162genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-1980133356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa+ k
  462915162  80 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 133
                67789***********************************************98 PP
2HD-ZIP_I/II121.73.6e-3980167289
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+
    462915162  80 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRA 167
                  9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1863133IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1965136IPR009057Homeodomain-like
PROSITE profilePS5007116.90875135IPR001356Homeobox domain
SMARTSM003899.7E-1677139IPR001356Homeobox domain
CDDcd000862.95E-1478136No hitNo description
PfamPF000466.2E-1680133IPR001356Homeobox domain
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
SMARTSM003401.5E-22135178IPR003106Leucine zipper, homeobox-associated
PfamPF021832.3E-10135168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGATSPSGLE LTMAVPGLSS SSGSEGFGCN NSNGNGNNNV MRVDLDMNQP ASGGEEEEFP  60
MGSVEEDEEE RGAGGPHRPK KLRLSKEQSR LLEESFRLNH TLTPKQKEAL AVKLKLRPRQ  120
VEVWFQNRRA RTKLKQTEME CEYLKRCFGS LTEENRRLQR EVEELRAMRV APPTVLTPHS  180
RQPLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626880.0BT062688.2 Zea mays full-length cDNA clone ZM_BFb0333H18 mRNA, complete cds.
GenBankEU9661900.0EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7282480.0KJ728248.1 Zea mays clone pUT6525 HB transcription factor (HB46) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645561.11e-107homeobox-leucine zipper protein HOX3 isoform X1
SwissprotQ0JKX11e-108HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-108HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2T7DJ801e-107A0A2T7DJ80_9POAL; Uncharacterized protein
STRINGORUFI01G27220.11e-107(Oryza rufipogon)
STRINGOS01T0643600-001e-107(Oryza sativa)
STRINGONIVA01G27550.11e-107(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-53homeobox-leucine zipper protein 17