PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915246
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 209aa    MW: 23896.4 Da    PI: 9.3928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915246genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.5e-18821671399
                T.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  13 s.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + lv++k +aeeh   +++s  +tle +  ++W+v+l +r  +++y+l++ W +Fv++ +Lk +D+++++ ++ +ef+ +v+++++
  462915246  82 PgASLVISKGYAEEHF--PAKSENITLERPGRKKWRVRLHVRPEGRGYLLSGHWADFVRDIHLKLNDVCILEPIKGNEFRVMVHLLDE 167
                24789**********7..456778***************99*******************************9999***999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-2265166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-2265163IPR015300DNA-binding pseudobarrel domain
CDDcd100177.42E-2168163No hitNo description
SMARTSM010192.6E-1170168IPR003340B3 DNA binding domain
PROSITE profilePS5086311.68871168IPR003340B3 DNA binding domain
PfamPF023621.2E-1676167IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRFDMAGRCG QTGPPCDGED SLPELQSLQS DHEEILSKHC FFPSRCNLTA EQEEELAELV  60
KKILPEFPLL VTRMKKSNVK GPGASLVISK GYAEEHFPAK SENITLERPG RKKWRVRLHV  120
RPEGRGYLLS GHWADFVRDI HLKLNDVCIL EPIKGNEFRV MVHLLDERCS HSTRGTNKSN  180
KRGTRKVTPT VHAQEKSGRR IFTNHCLFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313439.17e-50uncharacterized protein LOC8062507 isoform X1
RefseqXP_021313446.17e-50uncharacterized protein LOC8062507 isoform X1
RefseqXP_021313447.17e-50uncharacterized protein LOC8062507 isoform X2
TrEMBLA0A1B6QJB72e-48A0A1B6QJB7_SORBI; Uncharacterized protein
TrEMBLA0A1Z5S5Y72e-48A0A1Z5S5Y7_SORBI; Uncharacterized protein
TrEMBLA0A1Z5S6042e-48A0A1Z5S604_SORBI; Uncharacterized protein
TrEMBLA0A3L6SAF45e-49A0A3L6SAF4_PANMI; Uncharacterized protein
STRINGPavir.Ia01275.1.p2e-47(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2959434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-07related to ABI3/VP1 1