PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915249
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 756aa    MW: 85247.4 Da    PI: 7.4983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915249genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53.2e-105225784499
                -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
         B3  44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                ++W   +  r+  ++ +l + W +Fv++n++kegD++v++ ++  ++f+++v ++r+
  462915249 522 NKWHPLFYKRNENRKNMLMGRWLDFVRDNNVKEGDICVLEPIKGeERFTFMVYLLRA 578
                78888884466666699999********************88555*******99987 PP
2B348.71.4e-156767511997
                -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                + ++a+e+   + +++t++  ++ g++W+ ++ + +++++ +l +GW +F+++ngL +gD+++F+l+++ +e +++v+++
  462915249 676 SVRYAAEYL--PSGGRTVV-LQRMGKTWNTQMVIHNGRRW-FLNGGWTKFARDNGLHVGDICLFELTKKeEELTMNVHII 751
                566777773..22444555.667*********77777766.6999*********************98779999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.063489579IPR003340B3 DNA binding domain
SuperFamilySSF1019361.01E-10521578IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.573521579IPR003340B3 DNA binding domain
CDDcd100171.53E-11522574No hitNo description
Gene3DG3DSA:2.40.330.107.2E-8522579IPR015300DNA-binding pseudobarrel domain
PfamPF023629.2E-9522578IPR003340B3 DNA binding domain
SMARTSM010193.5E-7660754IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-18673751IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-15674751IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-15675749No hitNo description
PROSITE profilePS5086312.224675754IPR003340B3 DNA binding domain
PfamPF023625.8E-14677751IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
YCLEKVVFDA SLEDWVCYEC LQKRGEITCS RSIEIVSSEW PPSHAHFGST VHEPVTKRVE  60
SAMSVGLWRN RKSHLDKYKS PNKIVSSRMD SLRKIHFKRK SIMQPMDNCT NRRRRICTST  120
DGAKALESCE TIGAKIAEGS NGENLQVENE TVAMNIKPSE GLIMKTSHVV LGYCLEKVVF  180
DASLEDWVCY ECLQKRGEIT CSRSIEIVSS EWPPSHAHFG STVHEPVTKR VESAMSVGLW  240
RNRKSHLDKY KSPNKIVSSR MDSLRKIHFK RKSIMQPMDN CTNRRRRICT STDGAKALES  300
CETIGAKIAE GSNGENLQVE NETVAMNIKP SEGLIMKTSH VVLGSSKLES SNPIAEHRNS  360
VLGKSRDTSK GMTNSGANLS FEYTNNNIPT NQHTSDIWNE ISGSSGHDNI ELSESSGRFV  420
ECQKCSFCQQ GRTLKMATTS SSLEESGEDI PTGNMSSEWD DLQALPGCDY VLSRTSDLSE  480
AQKERVMAFI QDTKPEITVF VSVIGKNNVQ PPGPYLSPGM SNKWHPLFYK RNENRKNMLM  540
GRWLDFVRDN NVKEGDICVL EPIKGEERFT FMVYLLRASA THSTGGDGFQ RVGQYAGVSI  600
AKITSEVYNE GPINEEHVSS ERVIHEISLK SLESEDSDDP FPPFYIVACR NDLSKSQKKI  660
VEERVRAIRS DDPELSVRYA AEYLPSGGRT VVLQRMGKTW NTQMVIHNGR RWFLNGGWTK  720
FARDNGLHVG DICLFELTKK EEELTMNVHI ILREQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269286KRKSIMQPMDNCTNRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9HSP41e-175A0A0A9HSP4_ARUDO; Uncharacterized protein
STRINGPavir.Ia01276.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172